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Publications

Next-Generation Sequencing Methods for Sensitive Characterisation of Hepatitis B Viral Genomes: A European Multicentre Study

Fu MX. et al, (2025)

Whole genome sequencing of hepatitis B virus using tiled amplicon (HEPTILE) and probe based enrichment on Illumina and Nanopore platforms.

Lumley SF. et al, (2025), Sci Rep, 15

Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure

ZHAO L. et al, (2025), PLoS Pathogens

Author Correction: Sustained aviremia despite anti-retroviral therapy non-adherence in male children after in utero HIV transmission.

Bengu N. et al, (2025), Nat Med

Treatment options to support the elimination of Hepatitis C: an open label, factorial randomised controlled trial

Cooke G. et al, (2025), The Lancet

Hepatitis C virus cascade of care among adults in Sindh province, Pakistan: Findings from 2019-2020 household sero-survey.

Alamneh TS. et al, (2025), PLOS Glob Public Health, 5

Changes in the prevalence of hepatitis B and C viral infections in Sindh province, Pakistan: Findings from two sero-surveys in 2007 and 2019.

Alamneh TS. et al, (2024), J Viral Hepat, 31, 645 - 656

Lineage-aware evolutionary analysis of hepatitis C virus within-host dynamics

Zhao L. et al, (2024)

Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data.

Mayne R. et al, (2024), Bioinformatics, 40

Prospective cohort for early detection of liver cancer (Pearl): a study protocol.

Khanna K. et al, (2024), BMJ Open, 14

Whole genome sequencing of hepatitis B virus (HBV) using tiled amplicon (HEP-TILE) and probe-based enrichment on Illumina and Nanopore platforms

Lumley SF. et al, (2024)

Inference of Host-Pathogen Interaction Matrices from Genome-Wide Polymorphism Data.

Märkle H. et al, (2024), Mol Biol Evol, 41

Hepatitis B Core Related Antigen - Does it meet our expectations? Evidence from Cohorts in the United Kingdom and South Africa

Downs LO. et al, (2024)

Multiple risk factors for persistent HBV viraemia in an adult receiving nucleos/tide analogue therapy.

Lumley S. et al, (2024), Sex Transm Infect, 100, 329 - 331

Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data

Mayne R. et al, (2024)

Sustained aviraemia despite anti-retroviral therapy non-adherence in male children following in utero hiv transmission.

Bengu N. et al, (2024), Nat Med

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.

Lin G-L. et al, (2024), Nat Commun, 15

A putative hepatitis B virus sequence motif associated with hepatocellular carcinoma in South African adults

Maponga TG. et al, (2024)

Prevalence of resistance-associated viral variants to the HIV-specific broadly neutralising antibody 10-1074 in a UK bNAb-naïve population.

Zacharopoulou P. et al, (2024), Front Immunol, 15

HepFREEPak: protocol for a multi-centre, prospective observational study examining efficacy and impact of current therapies for the treatment of hepatitis C in Pakistan and reporting resistance to antiviral drugs: study protocol.

Arif A. et al, (2023), BMC Public Health, 23

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