Professor of Virology and Immunology
- Member of the UK Parliament's COVID-19 Outbreak Expert Database
- Member of the UK Government’s COVID-19 Outbreak Expert Database
Virology, immunology, and evolution; understanding the co-evolution of pathogens and human immune responses and the impact on disease development and progression
My primary research interests are to understand the determinants of virus-specific T cell responses to persistent viral infections with neurological manifestations, the co-evolution of the pathogen and the human immune response and how a better understanding of these interactions might lead to better treatment of these infections.
The main focus has been on human immunodeficiency virus type 1 (HIV-1) because the rapid evolution of this virus allows real-time evaluation of the interplay between the virus and the infected human host, but my group also works on hepatitis C virus (HCV) and human polyomavirus JC (JCV).
Neurological disturbances are frequent in patients with HIV-1 or AIDS. They occur in 30-50% of HIV-infected individuals and can present as the initial symptom, throughout the disease or in advanced AIDS.
HIV-1 might affect the nervous system directly or may act indirectly by weakening the immune system so that tumors of the nervous system or other infections develop. One example is the reactivation of JCV, which cases Progressive Multifocal Leukoencephalopathy (PML) in about 5% of untreated AIDS patients and an immune reconstitution inflammatory syndrome (IRIS) in HIV-infected patients receiving antiretroviral therapy. Because a JCV-specific T-cell response is associated with PML survival, it is necessary to understand better the determinants of these responses and how they might be reinforced.
A simple, safe and sensitive method for SARS-CoV-2 inactivation and RNA extraction for RT-qPCR
Kalnina L. et al, (2021), APMIS
HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification
Kist NC. et al, (2020), Virus Evolution
Recovery from COVID-19 in a B-cell-depleted multiple sclerosis patient.
Wurm H. et al, (2020), Multiple sclerosis (Houndmills, Basingstoke, England), 26, 1261 - 1264
HIV-infected sex workers with beneficial HLA-variants are potential hubs for selection of HIV-1 recombinants that may affect disease progression.
Chang C-H. et al, (2015), Sci Rep, 5
Possible footprints of APOBEC3F and/or other APOBEC3 deaminases, but not APOBEC3G, on HIV-1 from patients with acute/early and chronic infections.
Armitage AE. et al, (2014), J Virol, 88, 12882 - 12894