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Publications

Multiple introductions of NRCS-A Staphylococcus capitis to the neonatal intensive care unit drive neonatal bloodstream infections: a case-control and environmental genomic survey

Lees E. et al, (2024), Microbial Genomics

Developing a Framework for Tracking Antimicrobial Resistance Gene Movement in a Persistent Environmental Reservoir

Mathers A. et al, (2024), npj Antimicrobials and Resistance

Corrigendum to "No evidence of difference in mortality with amoxicillin versus co-amoxiclav for hospital treatment of community-acquired pneumonia" [J Infect 88 (2024) 106161].

Wei J. et al, (2024), J Infect, 89

Predicting individual patient and hospital-level discharge using machine learning

Wei J. et al, (2024), Communications Medicine

Comparative evaluation of large-language models and purpose-built software for medical record de-identification

Kuo R. et al, (2024)

Comparison of direct cDNA and PCR-cDNA Nanopore sequencing of RNA from Escherichia coli isolates.

Rodger G. et al, (2024), Microb Genom, 10

Global burden of bacterial antimicrobial resistance 1990-2021: a systematic analysis with forecasts to 2050.

GBD 2021 Antimicrobial Resistance Collaborators None., (2024), Lancet, 404, 1199 - 1226

Predicting future hospital antimicrobial resistance prevalence using machine learning

VIHTA K-D. et al, (2024), Communications Medicine

Developing a novel approach to complex evolution of antimicrobial resistance via mobile genetic elements from a persistent environmental biofilm

Mathers A. et al, (2024)

Expanding the use of mathematical modeling in healthcare epidemiology and infection prevention and control.

Grant R. et al, (2024), Infect Control Hosp Epidemiol, 1 - 6

Global, regional, and national incidence and mortality burden of non-COVID-19 lower respiratory infections and aetiologies, 1990-2021: a systematic analysis from the Global Burden of Disease Study 2021.

GBD 2021 Lower Respiratory Infections and Antimicrobial Resistance Collaborators None., (2024), Lancet Infect Dis, 24, 974 - 1002

Epidemiology and excess mortality of antimicrobial resistance in bacteraemias among cancer patients: a cohort study using routinely collected health data from regional hospital trusts in Oxford and Oslo, 2008-2018

Danielsen AS. et al, (2024)

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting

Stoesser N. et al, (2024), JAC AMR

Transformers and large language models are efficient feature extractors for electronic health record studies

Yuan K. et al, (2024)

'Bloodstream infection': A valuable concept we should keep in our toolbox.

Danielsen AS. et al, (2024), J Infect, 89

Retrospective analysis of hospital electronic health records reveals unseen cases of acute hepatitis with unknown aetiology in adults in Oxfordshire.

Tan CCS. et al, (2024), BMC Public Health, 24

The novel 2024 WHO Neisseria gonorrhoeae reference strains for global quality assurance of laboratory investigations and superseded WHO N. gonorrhoeae reference strains-phenotypic, genetic and reference genome characterization.

Unemo M. et al, (2024), J Antimicrob Chemother

Immunogenicity of COVID-19 vaccines in patients with follicular lymphoma receiving frontline chemoimmunotherapy.

Lim YJ. et al, (2024), Br J Haematol

Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification

POUWELS K. et al, (2024), Nature Communications

Nanopore sequencing of influenza A and B in Oxfordshire and the United Kingdom, 2022-23.

Cane J. et al, (2024), J Infect

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